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lamindb

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  • Guide
  • API
  • Changelog

Site Navigation

  • Guide
  • API
  • Changelog

Overview

  • Introduction
  • Tutorial: Artifacts
  • Tutorial: Features & labels

How to

  • Install & setup
  • Query & search
    • Query & search registries
    • Query arrays
  • Track notebooks & scripts
  • Curate datasets
    • Curate DataFrames and AnnDatas
    • Curate datasets of any format
    • Enforce pre-defined validation constraints
  • Manage biological registries
  • Manage schema modules
  • Transfer data

Other topics

  • FAQ
    • What happens if I save the same artifacts & records twice?
    • Will data & metadata stay in sync?
    • Can I disable tracking run inputs?
    • What happens when importing lamindb and the instance is not yet setup?
    • What happens if I import a schema module without lamindb?
    • Where to store external links and IDs?
    • What does the key parameter do under the hood?
    • When do visibility of artifacts and collections change?
    • How to delete records?
    • Keep artifacts local in a cloud instance
    • Why should I validate against gene symbols?
  • Storage
    • Track artifacts, in-memory objects & folders [S3 storage]
    • Add, replace, cache and delete artifacts
    • Test AnnDataAccessor
    • Prepare transfer artifacts from a local instance to a cloud instance
    • Transfer artifacts from a local instance to a cloud instance
    • Vitessce integration

Curate datasets¶

  • Curate DataFrames and AnnDatas
  • Curate datasets of any format
  • Enforce pre-defined validation constraints

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Track notebooks & scripts

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Curate DataFrames and AnnDatas
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